Genes and Genomes

Note Packet

Lesson Topic Statement(s) and Objective(s) Activities
1 Genes

3.1.U1:  A gene is a heritable factor that consists of a length of DNA and influences a specific characteristic.

  • Define gene.


3.1.U2:  A gene occupies a specific position on a chromosome.

  • Define gene locus.


3.1.A2:  Comparison of the number of genes  in humans with other species.

  • State the number of genes in the human genome.

  • Describe the relationship between the number of genes in a species and the species complexity in structure, physiology and behavior.

Intro to genes notes

Intro to genes CFU

Location of disease genes activity

A&B:  newest human gene tally (questions)

Scitable:  Analyzing gene function

A&B:  Telling Jewels From Junk in DNA (questions)

A&B:  The Complex Truth About 'Junk DNA' 

A&B:  It'll Never Fly: When Gene Names Are TOO Fun 

Zoom in on your genome

2 Alleles

3.1.U3:  The various specific forms of a gene are alleles.

  • Define allele.

  • List two examples of genes with multiple alleles.

  • State a similarity between alleles of the same gene.


3.1.U4:  Alleles differ from each other by one or only a few bases.

  • State the difference between alleles of the same gene.

Alleles notes

A&B:  Uncommon Carriers (questions)
3 Mutations

3.1.U5:  New alleles are formed by mutation

  • State the source of new alleles of a gene.

  • Describe a base substitution mutation.


3.1.A1:  The causes of sickle cell anemia, including a base substitution mutation, a change to the base sequence of mRNA transcribed from it and a change to the sequence of a polypeptide in hemoglobin.

  • State the cause of sickle cell anemia, including the name of differences in the Hb alleles.

  • State the difference in amino acid sequences in transcription of normal and mutated Hb mRNA.

  • Outline the consequences of the Hb mutation on the impacted individual.

Formation of alleles

Effects of mutations

Mutations from HHMI

Sickle Cell form HNMI

Mutations CFU

View sickle and normal cells lab

Sickle cell story complete

Sickle cell story template

Sickle cell story cut outs

Example of sickle cell story

TED ed sickle cell

A&B:  Sickle Cell NYT:

A&B: This American Life “Bad Cell Service”

A&B: Gene therapy for hemophilia

A&B:  Throughline podcast sickle cell (19:30-25:10)

A&B:  This Podcast will Kill You 

  • First hand accounts (00:00-17:55)

  • Sickle cell affect (28:10-34:15)

Sickle cell patient's success with gene editing raises hopes and questions 

Scitable:  DNA is constantly changing…

A&B:  We are all mutants (questions)

A&B:  Mutations you want

A&B:  Double edged genes reading

A&B:  Uncommon Carriers

A&B:  White Tiger Mutation

A&B:  The DIY Scientist, the Olympian, and the Mutated Gene

A&B: eople With This Mutation Can’t Smell Stinky Fish 

Girl with deadly inherited condition is cured with gene therapy on NHS 

In Chernobyl’s Stray Dogs, Scientists Look for Genetic Effects of Radiation - The New York Times

Animal Mutation Rates Reveal Traits That Speed Evolution

 

4 Genomes

3.1.U6:  The genome is the whole of the genetic information of an organism

  • Define genome.

  • State the size in base pairs of the human genome.


3.2.A2:  Comparison of genome size in T2 phage, Escherichia coli, Drosophila melanogaster, Homo sapiens, Paris japonica

  • Describe the relationship between the genome size of a species and the species complexity in structure, physiology and behavior.

What is a genome notes

Comparing genome size notes 

Comparing genome size video

Human genome visualization

Human genome flow chart

Sars-CoV2 genome questions

Reading:  smallest genome ever (questions)

Reading:  largest genome
5 Sequencing and the HGP

3.1.U7:  The entire base sequence of human genes was sequenced in the Human Genome Project

  • Define “sequence” in relation to genes and/or genomes.

  • State the aim of the Human Genome Project.

  • Outline two outcomes of the Human Genome Project.


3.1.NOS:  Developments in scientific research follow improvements in technology-gene sequencers are used for the sequencing of genes 

  • Outline the technological improvements that have sped the DNA sequencing process.

  • Determine a DNA sequence from an electropherogram.


7.1.A3:  Use of nucleotides containing dideoxyribonucleic acid to stop DNA replication in preparation of samples for base sequencing 

  • Outline the process of DNA sequencing, including the role of chain terminator nucleotides, fluorescence, and electrophoresis.

Scitable:  The order of nucleotides in a gene...

HGP and sequencing notes

HGP Notes

Sequencing CFU

Modeling DNA sequencing

Sequencing cut outs

M&M Sequencing NABT

Sequence alignment lab

(sometimes done in the cladistics unit)

Pronouncing the Human Genome (satire)

A&B:  Economic Return of the HGP (questions)

A&B:  Mummy genetic secrets

A&B:  genomics for the people

A&B:  Should babies be sequenced (questions)

Sequencing projects will screen 200,000 newborns for disease genes | Science | AAAS

From Alpacas to Yaks, Mammal DNA Yields Its Secrets - The New York Times


What Cheetahs, Armadillos and Whales Revealed About Human DNA


6 Mystery Genes

3.2.S1:   Use of databases to identify the focus of a human gene and its polypeptide product

  • Search NCBI or OMIM for a given gene.

  • Determine the gene locus, abbreviated gene name, and description of the gene.


3.1.S1:  Use of a database to determine differences in the base sequence of a gene in two species.

  • Explain why cytochrome oxidase 1  is often used to assess the differences in the base sequences of a gene between two species.

  • Use NCBI to BLAST search for COX1 sequences for different species.

  • Use a computer software tool to create an alignment of the gene sequences between different species.

  • Outline information that can be determined given gene sequence alignment data.


7.3.NOS:  Developments in scientific research follow improvements in computing- the use of commuters has enabled scientists to make advances in bioinformatics applications such as locating genes within genomes and identifying conserved sequences.

  • Define bioinformatics.

  • Outline why computers are necessary for genome analysis.

  • List seven species for which the entire genome has been sequenced. 

Electropherograms

Practice electropherograms

Mystery genes 

Electropherograms for mystery genes

Mystery genes virtual version

Mystery gene results


7 Wrap Up and Review  

Final knowledge audit

Kahoot review

Quizizz Review

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